Yi-Chu Lin, Jung-Hsin Lin, Chia-Wei Chou, Yu-Fan Chang, Shu-Hao Yeh, and Ching-Chow Chen
Statins Increase p21 through Inhibition of Histone Deacetylase Activity and Release of Promoter-Associated HDAC1/2
Cancer Res. 68: 2375-2383 (2008) .

Rommie E. Amaro, David D. L. Minh, Lily S. Cheng, William M. Lindstrom, Jr., Arthur J. Olson, Jung-Hsin Lin, Wilfred W. Li and J. Andrew McCammon
Remarkable Loop Flexibility in Avian Influenza N1 and its Implications for Antivirial Drug Design
J. Am. Chem. Soc. 129: 7764-7765 (2007) .

S.-S. Lee, U. Venkatesham, C. P. Rao, S.-H. Lam, J.-H. Lin
Preparation of Secolycorines against Acetylcholinesterase
Bioorganic & Medicinal Chem. 15: 1034-1043 (2007) .

A. L. Perryman, J.-H. Lin, J.A. McCammon
Optimization and computational evaluation of a series of potential active site inhibitors of the V82F/I84V drug-resistant mutant of HIV-1 protease: an application of the relaxed complex method of structure-based drug design
Chem. Biol. Drug Design 67: 336-345 (2006) .

D. T.-H. Chang, Y.-Z. Weng, J.-H. Lin, M.-J. Hwang, Y.-J. Oyang
Promtemot: prediction of protein binding sites with automatically extracted geometrical templates
Nucleic Acids Res. 34: W304-W309 (2006) .

A. L. Perryman, J.-H. Lin, J.A. McCammon
Restrained molecular dynamics of HIV-1 protease: Validating a new target for drug design.
Biopolymer 82: 272-284 (2006).

D. Vigil, J.-H. Lin, C. A. Sotriffer, J. K. Pennypacker, J.A. McCammon and S. S. Taylor A simple electrostatic switch important in the activation of type I protein kinase A by cyclic AMP
Prot. Sci. 15: 113-121 (2006) .

J. R. Giorgione, J.-H. Lin, J.A. McCammon and A. C. Newton
Increased membrane affinity of the C1 domain of protein kinase Cδ components for the lack of involvement of its C2 Domain in membrane recruitment.
J. Biol. Chem. 281: 1660-1669 (2006) .

D. T.-H. Chang, Y.-J. Oyang, J.-H. Lin*
MEDock: a web server for efficient prediction of ligand binding based on a novel optimization algorithm
Nucleic Acids Res. 33: W233-W238 (2005) .

A. L. Perryman, J.-H. Lin, J.A. McCammon
HIV-1 Protease Molecular Dynamics of a Wild-Type and of the V82F/I84V Mutant: Possible Contributions to Drug Resistance and a Potential New Drug Target Site for Drugs
Prot. Sci. 13: 1108-1123 (2004) .

J.-H Lin, A. L. Perryman, J. R. Schames and J. A. McCammom
The Relaxed Complex Method: Accommodating Receptor Flexibility for Drug Design with an Improved Scoring Scheme
Biopolymers 68: 47-62 (2003) .

J.-H Lin, N. A. Baker and J. A. McCammom
Bridging Implicit and Explicit Solvent Approaches for Membrane Electrostatics
Biophys. J. 83: 1374-1379 (2002).

J.-H Lin, A. L. Perryman, J. R. Schames and J. A. McCammom
Computational Drug Design Accommodating Receptor Flexibility: The Relaxed Complex Scheme
J. Am. Chem. Soc. 124: 5632-5633 (2002).

J.-H. Lin.
Structures, Dynamics, and Energetics of Protein Membrane Interactions. Molecular Dynamics Studies.
Ph.D. Thesis (submitted September 29, accepted December 10, 1999, disputed January 3, 2000).

J.-H. Lin, and A. Baumgaertner.
Stability of a melittin pore in a lipid bilayer : a molecular dynamics study.
Biophys. J. 78: 1714-1724 (2000).

J.-H. Lin, and A. Baumgaertner.
Molecular dynamics simulations of hydrophobic and amphiphatic proteins interacting with a lipid bilayer membrane.
Comput.Theor.Poly.Sci. 10:1-2 97-102 (2000).

J.-H. Lin, and A. Baumgaertner.
Adsorption of melittin to a lipid bilayer : a molecular dynamics study.
J.Mol.Liquids 84:1 89-98 (1999) .

J.-H. Lin, and A. Baumgaertner.
A Combined Monte Carlo/Molecular Dynamics Simulation of a Hypothetical Melittin Pore.
In Molecular Dynamics on Parallel Computers, p.338 edited by R. Esser, P. Grassberger and J. Grotendorst World Scientific Publishing Co. Pte. Ltd., (2000) .

J.-H. Lin, and A. Baumgaertner.
Molecular Dynamics Simulation of Melittin at the POPC Membrane/Water Interface.
In Molecular Dynamics on Parallel Computers, p. 336 edited by R. Esser, P. Grassberger and J. Grotendorst World Scientific Publishing Co. Pte. Ltd., (2000) .

J.-H. Lin, and A. Baumgaertner.
Computersimulation zum Transportprozess eines Proteins.
Zeitschrift Nachrichten aus Chemie 7/8, Zeitschrift der GDCh, S.734, (1998) .

J.-H. Lin, N.v.Westernhagen and A. Baumgaertner.
Computersimulation eines Ionenkanals.
Bilder Wissenschaft,11/1998.